DOS 
Wikipedia article covering the history and design of DOS.
http://en.wikipedia.org/wiki/DOS
PhysTechSoft Ltd. 
Makes PTS-DOS 2000: network support, file manager, archiver, internal boot virus protection, graphical web browser; email, telnet, FTP clients; many utilities, some for embedded system development.
http://www.phystechsoft.com/ptsdos/
RMF-DOS 
Reduced Memory Footprint; goals: match functions of MS-DOS 6.22, IBM PC DOS 7.00, DR-DOS 7 subset. Written mainly in 2 free C compilers and assembler, most parts are smaller uncompressed than compressed parts of MS, IBM, DR. [Open Source, BSD]
http://sourceforge.net/projects/rmfdos/
RealDOS 
A barebones DOS alternative.
http://www.realdos.de/english/
Shell Tips 
Blog covering useful tips for a number of command line interfaces including the DOS shell.
http://www.shell-tips.com/category/dos-windows-batch-files/
Unofficial PTS-DOS FAQ 
In English and German languages; with wiki, downloads, links.
http://www.almnet.de/ptsdos/index.en.html
ZDOS 
Realtime, 32-bit replacement for 16-bit DOS, with modern features: multitasking, demand paging, SMP. Coded in pure Assembly language. Zebor Technology.
http://www.zebor.com/main/zdos.html
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