CMM 
Center for Molecular Modeling: Several tutorials related to molecular modeling, directory of software and links to databases.
http://cmm.info.nih.gov/modeling/
Computational Chemistry Comparison and Benchmark Database 
NIST database of small molecules with well established heat of formation, including results from many computational methods, including semiempirical and ab initio with various basis sets.
http://srdata.nist.gov/cccbdb/Default.htm
Computational Chemistry List 
A resource for computational chemists. Discussions on chemistry software, data, conferences, jobs, quantum chemistry, molecular mechanics, molecular dynamics, QSAR, molecular graphics, molecular modeling, and associated archives
http://www.ccl.net/chemistry/
Computational Chemistry Resources 
Directory of links related to computational chemistry. Offers several tutorials for understanding the basics of molecular structure and molecular modeling techniques.
http://www.chem.swin.edu.au/chem_ref.html
Computational Chemistry and Organic Synthesis 
A tutorial intended for experimental organic chemists, with emphasis on computational methods for locating and characterizing transition states.
http://www.cmbi.ru.nl/tutorials/cheminf/mopac/comp.html
Doubly Nudged Elastic Band Method 
A framework for finding transition states based on the nudged elastic band method, balancing accuracy with efficiency.
http://www-wales.ch.cam.ac.uk/~sat39/DNEBtests/
Intertek ASG Computational Chemistry Group 
Services provided by the group include the calculation of molecular properties using computational chemistry, the management, analysis, visualisation and modelling of data, training, consultancy and problem solving.
http://www.intertek-cb.com/newsitetest/services/asg/compchem.shtml
MatHub 
Features current and background information about molecular modeling and informatics for chemistry and materials science.
http://www.mathub.com/
MathMol 
Provides students, teachers and researchers the basic concepts in mathematics and their connection to molecular modeling. Links to Software, 3D libraries and tutorials.
http://www.nyu.edu/pages/mathmol/
Molecular Docking Web 
Protein-ligand Docking, structures, bioinformatics, computational chemistry, and drug design resources.
http://www.scripps.edu/mb/olson/people/gmm/
Molecular Modeling for Organic Chemistry 
Summary of lecture course which aims to introduce the hierarchy of computational modeling methods used in Organic Chemistry. Links to background and supplemental information.
http://origin.ch.ic.ac.uk/local/organic/mod/
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