Computational Biology and Chemistry
   Publishes original papers and reviews in all areas of computational life sciences, such as nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-spec
   http://www.sciencedirect.com/science/journal/14769271

Journal of Chemical Information and Modeling (JCIM)
   Covers topics such as database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces,
   http://pubs.acs.org/journals/jcisd8/

Journal of Chemical Theory and Computation (JCTC)
   Publishes papers reporting new theories, methodology, and/or important applications in quantum chemistry, molecular dynamics, and statistical mechanics.
   http://pubs.acs.org/journals/jctcce/

Journal of Computational Chemistry
   Publishes original articles on ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformati
   http://www3.interscience.wiley.com/cgi-bin/jhome/33822

Journal of Computer Aided Chemistry
   Published by the Division of Chemical Information and Computer Science, The Chemical Society of Japan.
   http://www.chemistry.or.jp/journals/jcac/

Journal of Computer Chemistry, Japan (JCCJ)
   Published by the Society of Computer Chemistry, Japan.
   http://www.jstage.jst.go.jp/browse/jccj/

Journal of Computer-Aided Molecular Design
   Publishes articles on the theory and the application of computer-based methods in the analysis and design of molecules. This includes theoretical chemistry, computational chemistry, computer and molecular graphics, molecular modeling, protein engineering,
   http://www.kluweronline.com/issn/0920-654X

Journal of Molecular Graphics and Modelling
   Publishes original research on the development and application of molecular modelling in the study of molecular structure, function, interactions and design, including computational chemistry, protein and polymer engineering, pharmaceutical design, struct
   http://www.sciencedirect.com/science/journal/10933263

Journal of Molecular Modeling
   Publishes articles on life science modeling (including QSAR, data mining/bioinformatics, structure and substructure search), materials modeling, new methods, and computational chemistry in an interdisciplinary manner and within very short publication time
   http://www.springer.com/west/home?SGWID=4-102-70-1116860-detailsPage=journal|description|description

Journal of Molecular Structure: THEOCHEM
   Publishes research related to the theory and modelling of molecular systems, including electronic structure, ab initio and semiempirical; graphical approaches to structure and properties; molecular modelling; reaction dynamics and scattering; spectroscopi
   http://www.sciencedirect.com/science/journal/01661280

Journal of Theoretical and Computational Chemistry (JTCC)
   Covers the development of fundamental theoretical methodology and computational algorithms to extensive numerical applications to specific scientific problems ranging from gas-phase to condensed phase, and to biological systems.
   http://www.worldscinet.com/jtcc/jtcc.shtml

Molecular Simulation
   Covers all aspects of research related to, or of importance to, molecular modelling and simulation (including informatics, theoretical and experimental work).
   http://www.tandf.co.uk/journals/titles/08927022.asp

Tetrahedron Computer Methodology
   Journal that ran from 1988 to 1990 and was a pioneer in electronic publishing in chemistry. It published articles about the application of computers to chemistry, with some emphasis on what later became known as chemoinformatics.
   http://www.sciencedirect.com/science/journal/08985529

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)
   Publishes papers in all fields of theoretical chemistry, computational chemistry, and modeling.
   http://www.springer.com/east/home?SGWID=5-102-70-1026442-detailsPage=journal|description|description